wrangle_species_list - CLI interface

Perform various wrangle operations on a species list.

wrangle_species_list [-h] [--config_file CONFIG_FILE] [--log_filename LOG_FILENAME]
                     [--log_console] [-r REPORT_FILENAME]
                     in_species_list_filename wrangler_configuration_file
                     out_species_list_filename

wrangle_species_list positional arguments

• in_species_list_filename - Path to the input SpeciesList. (default: None)

• wrangler_configuration_file - Path to Matrix wrangler configuration. (default: None)

• out_species_list_filename - Path to the outut SpeciesList. (default: None)

wrangle_species_list optional arguments

• -h, --help - show this help message and exit

• --config_file CONFIG_FILE - Path to configuration file. (default: None)

• --log_filename LOG_FILENAME, -l LOG_FILENAME - A file location to write logging data. (default: None)

• --log_console - If provided, write log to console.

• -r REPORT_FILENAME, --report_filename REPORT_FILENAME - File location to write the wrangler report. (default: None)