wrangle_occurrences - CLI interface

Clean (filter / modify) occurrence records using data wranglers.

wrangle_occurrences [-h] [--config_file CONFIG_FILE] [-sp SPECIES_KEY] [-x X_KEY] [-y Y_KEY]
                    [--geopoint GEOPOINT] [-r REPORT_FILENAME] [--log_filename LOG_FILENAME]
                    [--log_console]
                    reader_filename writer_filename wrangler_config_filename

wrangle_occurrences positional arguments

reader_filename - Input occurrence CSV filename. (default: None)
writer_filename - Output cleaned occurrence CSV filename. (default: None)
wrangler_config_filename - Wrangler(s) configuration file. (default: None)

wrangle_occurrences optional arguments

-h, --help - show this help message and exit
--config_file CONFIG_FILE - Path to configuration file. (default: None)
-sp SPECIES_KEY, --species_key SPECIES_KEY - The CSV column header for species name. (default: species_name)
-x X_KEY, --x_key X_KEY - The CSV column header for the X (longitude) field. (default: x)
-y Y_KEY, --y_key Y_KEY - The CSV column header for the Y (latitude) field. (default: y)
--geopoint GEOPOINT - The CSV column header for the GeoPoint (containing longitude and latitude) field. (default: None)
-r REPORT_FILENAME, --report_filename REPORT_FILENAME - File location to write optional output report JSON. (default: None)
--log_filename LOG_FILENAME, -l LOG_FILENAME - A file location to write logging data. (default: None)
--log_console - If provided, write log to console.