wrangle_matrix - CLI interface

Perform various wrangle operations on a matrix such as subsetting and reordering.

wrangle_matrix [-h] [--config_file CONFIG_FILE] [-r REPORT_FILENAME]
               [--log_filename LOG_FILENAME] [--log_console]
               in_matrix_filename wrangler_configuration_file out_matrix_filename

wrangle_matrix positional arguments

• in_matrix_filename - Path to the input Matrix. (default: None)

• wrangler_configuration_file - Path to Matrix wrangler configuration. (default: None)

• out_matrix_filename - Path to the outut Matrix. (default: None)

wrangle_matrix optional arguments

• -h, --help - show this help message and exit

• --config_file CONFIG_FILE - Path to configuration file. (default: None)

• -r REPORT_FILENAME, --report_filename REPORT_FILENAME - File location to write the wrangler report. (default: None)

• --log_filename LOG_FILENAME, -l LOG_FILENAME - A file location to write logging data. (default: None)

• --log_console - If provided, write log to console.