API Reference

This page contains auto-generated API reference documentation 1.

• lmpy
  • lmpy.data_preparation
    • lmpy.data_preparation.build_grid
    • lmpy.data_preparation.layer_encoder
    • lmpy.data_preparation.occurrence_splitter
    • lmpy.data_preparation.tree_encoder
  • lmpy.data_wrangling
    • lmpy.data_wrangling.common
      • lmpy.data_wrangling.common.accepted_name_wrangler
    • lmpy.data_wrangling.matrix
      • lmpy.data_wrangling.matrix.accepted_name_wrangler
      • lmpy.data_wrangling.matrix.base
      • lmpy.data_wrangling.matrix.match_species_list_wrangler
      • lmpy.data_wrangling.matrix.match_tree_wrangler
      • lmpy.data_wrangling.matrix.purge_empty_slices_wrangler
      • lmpy.data_wrangling.matrix.subset_reorder_slices_wrangler
    • lmpy.data_wrangling.occurrence
      • lmpy.data_wrangling.occurrence.accepted_name_wrangler
      • lmpy.data_wrangling.occurrence.attribute_filter_wrangler
      • lmpy.data_wrangling.occurrence.attribute_modifier_wrangler
      • lmpy.data_wrangling.occurrence.base
      • lmpy.data_wrangling.occurrence.bounding_box_wrangler
      • lmpy.data_wrangling.occurrence.common_format_wrangler
      • lmpy.data_wrangling.occurrence.coordinate_conversion_wrangler
      • lmpy.data_wrangling.occurrence.decimal_precision_wrangler
      • lmpy.data_wrangling.occurrence.disjoint_geometries_wrangler
      • lmpy.data_wrangling.occurrence.intersect_geometries_wrangler
      • lmpy.data_wrangling.occurrence.match_species_list_wrangler
      • lmpy.data_wrangling.occurrence.minimum_points_wrangler
      • lmpy.data_wrangling.occurrence.spatial_index_wrangler
      • lmpy.data_wrangling.occurrence.unique_localities_wrangler
    • lmpy.data_wrangling.species_list
      • lmpy.data_wrangling.species_list.accepted_name_wrangler
      • lmpy.data_wrangling.species_list.base
      • lmpy.data_wrangling.species_list.intersect_species_list_wrangler
      • lmpy.data_wrangling.species_list.match_matrix_wrangler
      • lmpy.data_wrangling.species_list.match_tree_wrangler
      • lmpy.data_wrangling.species_list.union_species_list_wrangler
    • lmpy.data_wrangling.tree
      • lmpy.data_wrangling.tree.accepted_name_wrangler
      • lmpy.data_wrangling.tree.base
      • lmpy.data_wrangling.tree.match_matrix_wrangler
      • lmpy.data_wrangling.tree.match_species_list_wrangler
      • lmpy.data_wrangling.tree.subset_tree_wrangler
    • lmpy.data_wrangling.base
    • lmpy.data_wrangling.factory
  • lmpy.plots
    • lmpy.plots.map
    • lmpy.plots.scatter
  • lmpy.randomize
    • lmpy.randomize.grady
    • lmpy.randomize.swap
  • lmpy.sdm
    • lmpy.sdm.maxent
    • lmpy.sdm.model
  • lmpy.spatial
    • lmpy.spatial.geojsonify
    • lmpy.spatial.spatial_index
  • lmpy.statistics
    • lmpy.statistics.mcpa
    • lmpy.statistics.pam_stats
    • lmpy.statistics.running_stats
    • lmpy.statistics.significance
  • lmpy.tools
    • lmpy.tools._config_parser
    • lmpy.tools.aggregate_matrices
    • lmpy.tools.build_grid
    • lmpy.tools.calculate_p_values
    • lmpy.tools.calculate_pam_stats
    • lmpy.tools.convert_csv_to_lmm
    • lmpy.tools.convert_lmm_to_csv
    • lmpy.tools.convert_lmm_to_geojson
    • lmpy.tools.create_point_heatmap
    • lmpy.tools.create_rare_species_model
    • lmpy.tools.create_scatter_plot
    • lmpy.tools.create_sdm
    • lmpy.tools.create_stat_heatmap
    • lmpy.tools.create_tree_matrix
    • lmpy.tools.encode_layers
    • lmpy.tools.encode_tree_mcpa
    • lmpy.tools.mcpa_run
    • lmpy.tools.project_sdm
    • lmpy.tools.randomize_pam
    • lmpy.tools.split_occurrence_data
    • lmpy.tools.wrangle_matrix
    • lmpy.tools.wrangle_occurrences
    • lmpy.tools.wrangle_species_list
    • lmpy.tools.wrangle_tree
  • lmpy._version
  • lmpy.log
  • lmpy.matrix
  • lmpy.point
  • lmpy.species_list
  • lmpy.tree

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