create_rare_species_model - CLI interface

Create a “rare species” model by intersecting the convex hull for a group of occurrences with the ecoregions those points fall within and then rasterizing the result.

create_rare_species_model [-h] [--config_file CONFIG_FILE] [--log_filename LOG_FILENAME]
                          [--log_console] [-r REPORT_FILENAME]
                          [--species_column SPECIES_COLUMN] [--x_column X_COLUMN]
                          [--y_column Y_COLUMN] [--burn_value BURN_VALUE]
                          [--nodata_value NODATA_VALUE]
                          [--output_format {auto,AAIGrid,GTiff}]
                          point_csv_filename ecoregions_filename model_raster_filename

create_rare_species_model positional arguments

point_csv_filename - File location of an occurrence csv file. (default: None)
ecoregions_filename - File location of ecoregions raster file. (default: None)
model_raster_filename - File location to write the model raster file. (default: None)

create_rare_species_model optional arguments

-h, --help - show this help message and exit
--config_file CONFIG_FILE - Path to configuration file. (default: None)
--log_filename LOG_FILENAME, -l LOG_FILENAME - A file location to write logging data. (default: None)
--log_console - If provided, write log to console.
-r REPORT_FILENAME, --report_filename REPORT_FILENAME - File location to write the wrangler report. (default: None)
--species_column SPECIES_COLUMN, -sp SPECIES_COLUMN - CSV column for species or group name. (default: species_name)
--x_column X_COLUMN, -x X_COLUMN - CSV column containing x coordinate (ex. longitude). (default: x)
--y_column Y_COLUMN, -y Y_COLUMN - CSV column containing y coordinate (ex. latitude). (default: y)
--burn_value BURN_VALUE, -b BURN_VALUE - Raster burn value for model presence. (default: 50)
--nodata_value NODATA_VALUE, -n NODATA_VALUE - Raster nodata value for model absence. (default: -9999)
--output_format OUTPUT_FORMAT, -of OUTPUT_FORMAT - The output format for the model raster.(AAIGrid -> Ascii Grid, GTiff -> GeoTiff, auto -> Choose by filename. (default: auto)