create_tree_matrix - CLI interface

Create a trio of matrices representing a phylogenetic tree

create_tree_matrix [-h] [--config_file CONFIG_FILE]
                   tree_filename tree_schema out_tree_matrix_filename
                   out_node_heights_filename out_tip_lengths_filename

create_tree_matrix positional arguments

tree_filename - File path to a phylogenetic tree. (default: None)
tree_schema - The format of the tree file (ex. newick or nexus). (default: None)
out_tree_matrix_filename - File path to write encoded tree matrix (tip rows by node columns). (default: None)
out_node_heights_filename - File path to write node heights matrix. (default: None)
out_tip_lengths_filename - File path to write tip lengths matrix. (default: None)

create_tree_matrix optional arguments

-h, --help - show this help message and exit
--config_file CONFIG_FILE - Path to configuration file. (default: None)